
This post may contain affiliate links. Please read my disclosure policy.

About This Recipe
Imagine this: a chilled Reese’s peanut butter cup, but instead of peanut butter inside, you find cookie dough! Yes, that’s right, chilled, sugary cookie dough! That’s exactly what these healthy chocolate cookie dough cups are and they are OUT OF THIS WORLD!
These healthy cookie dough cups feature a frozen shell of rich dark chocolate stuffed with the best lightened up protein cookie dough. They’re truly amazing and do not taste lightened up for a second!
These no bake chocolate cookie dough cups are one of my favorite freezer snacks! They’re perfect for making in bulk and pulling out when you need something to curve that sweet tooth.
And if you love these cookie dough cups, try my Chocolate Covered Cookie Dough Squares, Monster Protein Cookie Dough Bars or my favorite Chocolate Chip Cookie Dough Bites!

Why You’ll Love These Chocolate Cookie Dough Cups
- Chocolate covered chilled cookie dough…do I need to say more?! 😍
- They require just a handful of staple ingredients you most likely already have.
- No oven required! We love a no-bake recipe.
- Protein packed! With almost 7g of protein per cup.
- Lightened up but doesn’t taste it for a second!
- So easy to make and such a convenient, healthy treat to have on hand!
- They’re freezer friendly! And one of my favorite freezer stash snacks!!

- Chocolate chips – I used dark chocolate chips since they’re more bitter and richer, making them a great contrast with the sweet cookie dough. But semi-sweet works good too. Milk chocolate may be a little sweet but if you like super sweet things, go on!
- Quick oats – quick oats give this cookie dough texture and make it more chewy. I wouldn’t recommend steel cut or old fashioned oats because they wouldn’t have quite the same effect. If you have old-fashioned oats you can pulse them in a food processor or blender a few times to get them like finer like quick oats.
- Protein powder – I used PEScience vanilla (code Laurenfitfoodie to save!) I typically stick to vanilla because it’s neutral and doesn’t overpower the rest of the cookie dough, but a peanut butter flavor could be yummy too. Different protein powders have different absorbent properties, so if your cookie dough seems too dry just add some milk a tsp at a time until you get to cookie dough consistency.
- Flour – I love using oat flour for this recipe because it makes a delicious flavored cookie dough! But all-purpose or gluten-free all-purpose flour also work (see notes below on heat treating all-purpose flour). I haven’t tested with almond flour but I’m confident that would work too. I wouldn’t recommend using coconut flour.
- Peanut butter – Peanut butter helps the texture of this cookie dough and I love the flavor it brings! But cashew butter, almond butter or any nut butter also work. Use sunflower butter to make this recipe nut free.
- Brown sugar – I used Truvia but regular brown sugar works too!
- Butter – I used light butter to bring the fat down a little bit but regular butter works even better if you want to use that. Use dairy-free butte if needed.
- Milk– we’ll just be using a tiny bit, like 1-2 tsp, to help this dough get to cookie dough consistency! But if you don’t have any you can easily replace with unsweetened applesauce or water!
- Vanilla – to make the cookie dough flavorful!!
How To Make
The full printable recipe is below, but let me walk you through the process so you know what to expect when you’re making it!

1. Add all the cookie dough ingredients (oats through milk) in a bowl

2. Mix together until well combined and cookie dough consistency. It takes a while for all the dry ingredients to mix in, but if you find it’s still too dry, add a little milk at a time (1 tsp) until desired consistency. Place in the freezer until ready to use.

3. Prepare a double boiler (add water to a saucepan and place a glass bowl in it). Bring water to a light boil then add chocolate chips to the glass bowl.

4. Stir the chocolate every 30 seconds until melted.

5. Meanwhile, gather 10 muffin cup liners and set on a mini muffin pan. Add 1 tsp of melted chocolate to the bottom of each liner. Lay a dish towel on the counter underneath the pan and gently tap the pan on the counter a few times to spread the chocolate across the bottom.

6. Roll 1.5 tablespoon of cookie dough into a thick oval disk and place on top of the chocolate base.

7. Then add the remaining chocolate on top, about 2 tsp per cup. Spread around with the back of your spoon or tap the pan on the counter again to get the chocolate to spread out evenly across the top and down the sides.

8. Sprinkle with flake salt (if desired) then freeze for at least 30 minutes. Keep stored in the freezer.
Are these cookie dough cups gluten-free?
Yes, as long as you use certified gluten-free oat flour or gluten-free all-purpose flour, these cookie dough cups are naturally gluten-free.
Can I make these cookie dough cups vegan?
Sure! Just use dairy-free butter and vegan protein powder.
What if I don’t have silicone muffin cups?
I like using these individual silicone muffin cups because I think they’re easier to work with but you can also line a mini muffin pan with liners!
Can I omit the protein powder?
You can, you may just need to add extra flour since not adding the protein powder would alter the wet/dry ratio of the cookie dough. Anywhere from 1/4 cup to 1/2 cup extra flour should work. Start with an extra 1/4 cup and gradually add until you get to cookie dough consistency.
Did you make this? If you snap a photo, please be sure leave a review, tag me on Instagram or TikTok at @LaurenFitFoodie or hashtag #LaurenFitFoodie so I can see your creations!

Healthy Chocolate Cookie Dough Cups
Ingredients
- 1 cup dark chocolate chips (180g)
- 1/2 cup quick oats (40g)
- 1/2 cup vanilla protein powder (40g)
- 1/4 cup oat flour (28g) or all-purpose flour**
- 1/8 tsp salt
- 1/4 cup peanut butter (56g)
- 2 Tbsp Truvia brown sugar* (24g) or brown sugar
- 3 Tbsp light butter (42g) or regular/dairy-free butter
- 2 tsp vanilla extract
- 1-2 tsp almond milk more as needed
- Flake sat for garnishing
Before You Begin! If you make this, please leave a review and rating letting us know how you liked this recipe! This helps our business thrive & continue providing free recipes. Scroll for macros and MyFitnessPal code.
Instructions
Make the Cookie Dough:
- Mix together all the cookie dough ingredients (oats through milk) in a bowl until well combined and cookie dough consistency. It takes a while for all the dry ingredients to mix in, but if you find it's still too dry, add a little milk at a time (1 tsp) until desired consistency. Place in the freezer until ready to use.
Melt the Chocolate:
- Prepare a double boiler (add water to a saucepan and place a glass bowl in it). Bring water to a light boil then add chocolate chips to the glass bowl. This is the easiest way to melt the chocolate without burning it but you can also microwave in 30 second increments at 50% power if you prefer. Stir the chocolate every 30 seconds until melted.
Make the Cups:
- Meanwhile, gather 10 silicone muffin cups and set on a flat sheet pan you can place in the freezer. You can also line a mini muffin pan with liners.
- Add 1 tsp of melted chocolate to the bottom of each liner. Lay a dish towel on the counter underneath the pan and gently tap the pan on the counter a few times to spread the chocolate across the bottom.
- Roll 1.5 tablespoon of cookie dough into a thick oval disk and place on top of the chocolate base.
- Then add the remaining chocolate on top, about 2 tsp per cup. Spread around with the back of your spoon or tap the pan on the counter again to get the chocolate to spread out evenly across the top and down the sides.
- Sprinkle with flake salt (if desired) then freeze for at least 30 minutes. Keep stored in the freezer.
Notes
- To heat treat, pour flour into a large bowl. Heat in 30-second intervals in the microwave until the flour temperature reaches 165°F (74°C). Mix with a spoon between intervals. Each microwave is different, but mine takes around 3 intervals.
Nutrition Information
Nutrition is hand-calculated and accurate. No autocalulations! However, note that values can vary based on the brands you use and if you substitute ingredients.